I agree with FFF: Your logline should NOT give away the end of your movie.
And you should make the priest's inner struggle more obvious: Is he a "devout" priest who finds himself doing all this stuff? Is he an "up-and-coming young" priest with "a bright future"?
And the kidnapping part of this is more important than when it took place: Did the priest's affair somehow tie to the kidnapping? What are the speculated motives for the kidnapping?
Maybe something more like:
"An up-and-coming young Vatican priest and nun fall into a torrid affair; then just after they end it, she is kidnapped by robed men in black. So the young priest begins trying to find out(against growing opposition) who is holding her, and why."