This draft of the logline describes a more credible scenario and a story with more detail than the first draft. However the descriptions are still too vague for a logline and dilute the impact of the characters in the plot.
"An unassuming young intellectual?" could mean a variety of things and doesn't describe the MC in such a way that makes the reader understand how the journey ahead will be both challenging and important for him to go on. Define him as a poet, author or accountant so the reader knows what his normal state of being is. Then add a character description that illustrates a flaw such as an agoraphobe, OCD or introverted especially considering the times these would be particularly difficult to live with.
"?face off with?" is too vague a description for the main action the MC will take in the story. Better to be specific in a logline, what will he do to defeat the bad guy? Will he fight him to the death? Will he set him up to be arrested? Will he climb the ranks of the organisation and take over?
"Greatest criminal kingpin?" could be used to describe Don Corleone, Tony Soprano or Gus Fring. Problem is there have been so many of them already you really need to be specific in your description of the antagonist. What makes this criminal genius unique and to that matter an even greater obstacle for the MC?
Lastly in log lines you want to state facts about the story define what goes on not could or may happen. Instead of "?may lead all the way to the Royal Family." use "?that leads all the way to the Royal family."